This paper presents eye2vec, an infrastructure for analyzing software developers' eye movements while reading source code. In common eye-tracking studies in program comprehension, researchers must preselect analysis targets such as control flow or syntactic elements, and then develop analysis methods to extract appropriate metrics from the fixation for source code. Here, researchers can define various levels of AOIs like words, lines, or code blocks, and the difference leads to different results. Moreover, the interpretation of fixation for word/line can vary across the purposes of the analyses. Hence, the eye-tracking analysis is a difficult task that depends on the time-consuming manual work of the researchers. eye2vec represents continuous two fixations as transitions between syntactic elements using distributed representations. The distributed representation facilitates the adoption of diverse data analysis methods with rich semantic interpretations.