Duplicated code or code clones are a kind of code smell that have both positive and negative impacts on the development and maintenance of software systems. Software clone research in the past mostly focused on the detection and analysis of code clones, while research in recent years extends to the whole spectrum of clone management. In the last decade, three surveys appeared in the literature, which cover the detection, analysis, and evolutionary characteristics of code clones. This paper presents a comprehensive survey on the state of the art in clone management, with in-depth investigation of clone management activities (e.g., tracing, refactoring, cost-benefit analysis) beyond the detection and analysis. This is the first survey on clone management, where we point to the achievements so far, and reveal avenues for further research necessary towards an integrated clone management system. We believe that we have done a good job in surveying the area of clone management and that this work may serve as a kind of roadmap for future research in the area