Software development needs continuous quality control for a timely detection and removal of quality problems. This includes frequent quality assessments, which need to be automated as far as possible to be feasible. One way of automation in assessing the security of software are application scanners that test an executing software for vulnerabilities. At present, common quality assessments do not integrate such scanners for giving an overall quality statement. This paper presents an integration of application scanners into a general quality assessment method based on explicit quality models and Bayesian nets. Its applicability and the detection capabilities of common scanners are investigated in a case study with two open-source web shops.