We propose a system, named ATVHunter, which can pinpoint the precise vulnerable in-app TPL versions and provide detailed information about the vulnerabilities and TPLs. We propose a two-phase detection approach to identify specific TPL versions. Specifically, we extract the Control Flow Graphs as the coarse-grained feature to match potential TPLs in the pre-defined TPL database, and then extract opcode in each basic block of CFG as the fine-grained feature to identify the exact TPL versions. We build a comprehensive TPL database (189,545 unique TPLs with 3,006,676 versions) as the reference database. Meanwhile, to identify the vulnerable in-app TPL versions, we also construct a comprehensive and known vulnerable TPL database containing 1,180 CVEs and 224 security bugs. Experimental results show ATVHunter outperforms state-of-the-art TPL detection tools, achieving 90.55% precision and 88.79% recall with high efficiency, and is also resilient to widely-used obfuscation techniques and scalable for large-scale TPL detection. Furthermore, to investigate the ecosystem of the vulnerable TPLs used by apps, we exploit ATVHunter to conduct a large-scale analysis on 104,446 apps and find that 9,050 apps include vulnerable TPL versions with 53,337 vulnerabilities and 7,480 security bugs, most of which are with high risks and are not recognized by app developers.