The ability to accurately represent and localise relevant objects is essential for robots to carry out tasks effectively. Traditional approaches, where robots simply capture an image, process that image to take an action, and then forget the information, have proven to struggle in the presence of occlusions. Methods using multi-view perception, which have the potential to address some of these problems, require a world model that guides the collection, integration and extraction of information from multiple viewpoints. Furthermore, constructing a generic representation that can be applied in various environments and tasks is a difficult challenge. In this paper, a novel approach for building generic representations in occluded agro-food environments using multi-view perception and 3D multi-object tracking is introduced. The method is based on a detection algorithm that generates partial point clouds for each detected object, followed by a 3D multi-object tracking algorithm that updates the representation over time. The accuracy of the representation was evaluated in a real-world environment, where successful representation and localisation of tomatoes in tomato plants were achieved, despite high levels of occlusion, with the total count of tomatoes estimated with a maximum error of 5.08% and the tomatoes tracked with an accuracy up to 71.47%. Novel tracking metrics were introduced, demonstrating that valuable insight into the errors in localising and representing the fruits can be provided by their use. This approach presents a novel solution for building representations in occluded agro-food environments, demonstrating potential to enable robots to perform tasks effectively in these challenging environments.