This study presents a system integration approach for planning schedules, sequences, tasks, and motions for reconfigurable robots to automatically disassemble constrained structures in a non-destructive manner. Such systems must adapt their configuration and coordination to the target structure, but the large and complex search space makes them prone to local optima. To address this, we integrate multiple robot arms equipped with different types of tools, together with a rotary stage, into a reconfigurable setup. This flexible system is based on a hierarchical optimization method that generates plans meeting multiple preferred conditions under mandatory requirements within a realistic timeframe. The approach employs two many-objective genetic algorithms for sequence and task planning with motion evaluations, followed by constraint programming for scheduling. Because sequence planning has a much larger search space, we introduce a chromosome initialization method tailored to constrained structures to mitigate the risk of local optima. Simulation results demonstrate that the proposed method effectively solves complex problems in reconfigurable robotic disassembly.