Accurate seabed mapping is essential for habitat monitoring and infrastructure inspection. In turbid, shallow coastal waters, such as shellfish aquaculture farms, the effectiveness of traditional optical methods is limited. Autonomous surface vehicles (ASVs) equipped with forward-looking sonar (FLS) offer a promising alternative. However, existing sonar-based systems face challenges in achieving fine resolution mapping over long trajectories due to low-resolution positioning measurements and accumulated drift over long trajectories. In this paper, we present a drift-resilient seabed mapping framework that integrates local FLS frame alignment using the Fourier-Mellin transform (FMT) with global trajectory optimization based on an extended Kalman filter (EKF) that fuses global positioning system (GPS), inertial measurement unit (IMU), and compass data. A variance-based image blending strategy is used to further reduce visual artifacts in overlapping regions. Field trials on a structured oyster farm site show that our framework helps reduce drift in RMSE by 9.5% relative to the FMT-only baseline. This framework also enables sub-meter reconstruction accuracy and preservation of high-resolution textures needed for oyster inventory estimation within the mapped areas.