Shape completion, i.e., predicting the complete geometry of an object from a partial observation, is highly relevant for several downstream tasks, most notably robotic manipulation. When basing planning or prediction of real grasps on object shape reconstruction, an indication of severe geometric uncertainty is indispensable. In particular, there can be an irreducible uncertainty in extended regions about the presence of entire object parts when given ambiguous object views. To treat this important case, we propose two novel methods for predicting such uncertain regions as straightforward extensions of any method for predicting local spatial occupancy, one through postprocessing occupancy scores, the other through direct prediction of an uncertainty indicator. We compare these methods together with two known approaches to probabilistic shape completion. Moreover, we generate a dataset, derived from ShapeNet, of realistically rendered depth images of object views with ground-truth annotations for the uncertain regions. We train on this dataset and test each method in shape completion and prediction of uncertain regions for known and novel object instances and on synthetic and real data. While direct uncertainty prediction is by far the most accurate in the segmentation of uncertain regions, both novel methods outperform the two baselines in shape completion and uncertain region prediction, and avoiding the predicted uncertain regions increases the quality of grasps for all tested methods.