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MPCS: Neuroplastic Continual Learning via Multi-Component Plasticity and Topology-Aware EWC Combining Trained Models in Reinforcement Learning Training Non-Differentiable Networks via Optimal Transport ShiftLIF: Efficient Multi-Level Spiking Neurons with Power-of-Two Quantization Probe-Geometry Alignment: Erasing the Cross-Sequence Memorization Signature Below Chance Benchmarking local Hebbian learning rules for memory storage and prototype extraction Robust volatility updates for Hierarchical Gaussian Filtering Spiking Sequence Machines and Transformers Affinity Is Not Enough: Recovering the Free Energy Principle in Mixture-of-Experts Scalable Learning in Structured Recurrent Spiking Neural Networks without Backpropagation Geometric and dynamical analysis of attractor boundaries and storage limits in kernel Hopfield networks Attractor FCM Physical Foundation Models: Fixed hardware implementations of large-scale neural networks When Does Structure Matter in Continual Learning? Dimensionality Controls When Modularity Shapes Representational Geometry Learning to Forget: Continual Learning with Adaptive Weight Decay Causal Learning with Neural Assemblies NORACL: Neurogenesis for Oracle-free Resource-Adaptive Continual Learning Text-Utilization for Encoder-dominated Speech Recognition Models EdgeSpike: Spiking Neural Networks for Low-Power Autonomous Sensing in Edge IoT Architectures EvoTSC: Evolving Feature Learning Models for Time Series Classification via Genetic Programming Analysis and Explainability of LLMs Via Evolutionary Methods Deployment-Aligned Low-Precision Neural Architecture Search for Spaceborne Edge AI SeaEvo: Advancing Algorithm Discovery with Strategy Space Evolution Primitive Recursion without Composition: Dynamical Characterizations, from Neural Networks to Polynomial ODEs MAEO: Multiobjective Animorphic Ensemble Optimization for Scalable Large-scale Engineering Applications Necessary and sufficient conditions for universality of Kolmogorov-Arnold networks Learn&Drop: Fast Learning of CNNs based on Layer Dropping Architecture-Induced Recoverability Bias in Differentiable Symbolic Regression Collocation-based Robust Physics Informed Neural Networks for time-dependent simulations of pollution propagation under thermal inversion conditions on Spitsbergen Structure-Guided Diffusion Model for EEG-Based Visual Cognition Reconstruction
Resolving Anomalies in the Behaviour of a Modularity Indu...
Zhenyue Qin, Tom Gedeon, Bob McKay · 2021-10-15 · via cs.NE updates on arXiv.org

Discrete gene regulatory networks (GRNs) play a vital role in the study of robustness and modularity. A common method of evaluating the robustness of GRNs is to measure their ability to regulate a set of perturbed gene activation patterns back to their unperturbed forms. Usually, perturbations are obtained by collecting random samples produced by a predefined distribution of gene activation patterns. This sampling method introduces stochasticity, in turn inducing dynamicity. This dynamicity is imposed on top of an already complex fitness landscape. So where sampling is used, it is important to understand which effects arise from the structure of the fitness landscape, and which arise from the dynamicity imposed on it. Stochasticity of the fitness function also causes difficulties in reproducibility and in post-experimental analyses. We develop a deterministic distributional fitness evaluation by considering the complete distribution of gene activity patterns, so as to avoid stochasticity in fitness assessment. This fitness evaluation facilitates repeatability. Its determinism permits us to ascertain theoretical bounds on the fitness, and thus to identify whether the algorithm has reached a global optimum. It enables us to differentiate the effects of the problem domain from those of the noisy fitness evaluation, and thus to resolve two remaining anomalies in the behaviour of the problem domain of~\citet{espinosa2010specialization}. We also reveal some properties of solution GRNs that lead them to be robust and modular, leading to a deeper understanding of the nature of the problem domain. We conclude by discussing potential directions toward simulating and understanding the emergence of modularity in larger, more complex domains, which is key both to generating more useful modular solutions, and to understanding the ubiquity of modularity in biological systems.