Prompt engineering is crucial for deploying LLMs but is poorly understood mathematically. We formalize LLM systems as a class of discrete stochastic dynamical systems to explore prompt engineering through the lens of control theory. We offer a mathematical analysis of the limitations on the controllability of self-attention as a function of the singular values of the parameter matrices. We present complementary empirical results on the controllability of a panel of LLMs, including Falcon-7b, Llama-7b, and Falcon-40b. Given initial state $\mathbf x_0$ from Wikitext and prompts of length $k \leq 10$ tokens, we find that the "correct" next token is reachable at least 97% of the time, and that the top 75 most likely next tokens are reachable at least 85% of the time. Intriguingly, short prompt sequences can dramatically alter the likelihood of specific outputs, even making the least likely tokens become the most likely ones. This control-theoretic analysis of LLMs demonstrates the significant and poorly understood role of input sequences in steering output probabilities, offering a foundational perspective for enhancing language model system capabilities.