Characterizing the solution sets in a problem by closedness under operations is recognized as one of the key aspects of algorithm development, especially in constraint satisfaction. An example from the Boolean satisfiability problem is that the solution set of a Horn conjunctive normal form (CNF) is closed under the minimum operation, and this property implies that minimizing a nonnegative linear function over a Horn CNF can be done in polynomial time. In this paper, we focus on the set of integer points (vectors) in a polyhedron, and study the relation between these sets and closedness under operations from the viewpoint of 2-decomposability. By adding further conditions to the 2-decomposable polyhedra, we show that important classes of sets of integer vectors in polyhedra are characterized by 2-decomposability and closedness under certain operations, and in some classes, by closedness under operations alone. The most prominent result we show is that the set of integer vectors in a unit-two-variable-per-inequality polyhedron can be characterized by closedness under the median and directed discrete midpoint operations, each of these operations was independently considered in constraint satisfaction and discrete convex analysis.