Categories of partitions are combinatorial structures arising from the representation theory of certain compact quantum groups and are linked to classical diagram algebras such as the Temperley-Lieb algebra. In this paper, we present efficient algorithms and data-structures for partitions of sets and their corresponding category operations, including a concrete implementation in the computer algebra system OSCAR. Moreover, we show that there exists a category of partitions for which the natural computational problems of deciding membership of a given partition as well as counting partitions of a given size are algorithmically undecidable.