The decomposition of complex structures into simpler substructures is a powerful technique with a wide range of applications. We study the computation of decompositions in the context of programmable matter. The amoebot model is a well-established model for programmable matter, which places $n$ tiny robots called amoebots on the triangular grid. We consider the reconfigurable circuit extension of the geometric amoebot model, which allows amoebots to interconnect via so-called circuits. Amoebots can then instantaneously transmit simple beeps to all amoebots connected by the same circuit. Using reconfigurable circuits, previous papers have described a linear-time triangulation algorithm, and a logarithmic-time decomposition algorithm into so-called tunnel regions. Both algorithms only work on a restricted class of amoebot structures. In this paper, we define a decomposition into $O(|\mathcal H|)$ simple, geodesically convex regions for arbitrary amoebot structures, and show how it can compute such a decomposition in $O(\log n)$ rounds, where $|\mathcal H|$ denotes the number of holes in the amoebot structure. As a byproduct, we also improve the global maxima algorithm of Padalkin et al. (Nat. Comput., 2024) for special cases and with that also their spanning tree algorithm to $O(\log n)$ rounds w.h.p.