Cloud computing has become more popular in provision of computing resources under virtual machine (VM) abstraction for high performance computing (HPC) users to run their applications. A HPC cloud is such cloud computing environment. One of challenges of energy efficient resource allocation for VMs in HPC cloud is tradeoff between minimizing total energy consumption of physical machines (PMs) and satisfying Quality of Service (e.g. performance). On one hand, cloud providers want to maximize their profit by reducing the power cost (e.g. using the smallest number of running PMs). On the other hand, cloud customers (users) want highest performance for their applications. In this paper, we focus on the scenario that scheduler does not know global information about user jobs and user applications in the future. Users will request shortterm resources at fixed start times and non interrupted durations. We then propose a new allocation heuristic (named Energy-aware and Performance per watt oriented Bestfit (EPOBF)) that uses metric of performance per watt to choose which most energy-efficient PM for mapping each VM (e.g. maximum of MIPS per Watt). Using information from Feitelson's Parallel Workload Archive to model HPC jobs, we compare the proposed EPOBF to state of the art heuristics on heterogeneous PMs (each PM has multicore CPU). Simulations show that the EPOBF can reduce significant total energy consumption in comparison with state of the art allocation heuristics.