We present Ditto, an automated framework for cloning end-to-end cloud applications, both monolithic and microservices, which captures I/O and network activity, as well as kernel operations, in addition to application logic. Ditto takes a hierarchical approach to application cloning, starting with capturing the dependency graph across distributed services, to recreating each tier's control/data flow, and finally generating system calls and assembly that mimics the individual applications. Ditto does not reveal the logic of the original application, facilitating publicly sharing clones of production services with hardware vendors, cloud providers, and the research community. We show that across a diverse set of single- and multi-tier applications, Ditto accurately captures their CPU and memory characteristics as well as their high-level performance metrics, is portable across platforms, and facilitates a wide range of system studies.