Assessing the security level of IoT applications to be deployed to heterogeneous Cloud-Edge infrastructures operated by different providers is a non-trivial task. In this article, we present a methodology that permits to express security requirements for IoT applications, as well as infrastructure security capabilities, in a simple and declarative manner, and to automatically obtain an explainable assessment of the security level of the possible application deployments. The methodology also considers the impact of trust relations among different stakeholders using or managing Cloud-Edge infrastructures. A lifelike example is used to showcase the prototyped implementation of the methodology.