Recent research in both academia and industry has validated the effectiveness of provenance graph-based detection for advanced cyber attack detection and investigation. However, analyzing large-scale provenance graphs often results in substantial overhead. To improve performance, existing detection systems implement various optimization strategies. Yet, as several recent studies suggest, these strategies could lose necessary context information and be vulnerable to evasions. Designing a detection system that is efficient and robust against adversarial attacks is an open problem. We introduce Marlin, which approaches cyber attack detection through real-time provenance graph alignment.By leveraging query graphs embedded with attack knowledge, Marlin can efficiently identify entities and events within provenance graphs, embedding targeted analysis and significantly narrowing the search space. Moreover, we incorporate our graph alignment algorithm into a tag propagation-based schema to eliminate the need for storing and reprocessing raw logs. This design significantly reduces in-memory storage requirements and minimizes data processing overhead. As a result, it enables real-time graph alignment while preserving essential context information, thereby enhancing the robustness of cyber attack detection. Moreover, Marlin allows analysts to customize attack query graphs flexibly to detect extended attacks and provide interpretable detection results. We conduct experimental evaluations on two large-scale public datasets containing 257.42 GB of logs and 12 query graphs of varying sizes, covering multiple attack techniques and scenarios. The results show that Marlin can process 137K events per second while accurately identifying 120 subgraphs with 31 confirmed attacks, along with only 1 false positive, demonstrating its efficiency and accuracy in handling massive data.