Electroencephalogram (EEG) signals serve as a powerful tool in affective Brain-Computer Interfaces (aBCIs) and play a crucial role in affective computing. In recent years, the introduction of deep learning techniques has significantly advanced the development of aBCIs. However, the current emotion recognition methods based on deep transfer learning face the challenge of the dual dependence of the model on source domain and target domain, As well as being affected by label noise, which seriously affects the performance and generalization ability of the model. To overcome this limitation, we proposes a Pairwise Learning framework with Domain and Category Prototypes for EEG emotion recognition under unseen target conditions (PL-DCP), and integrating concepts of feature disentanglement and prototype inference. Here, the feature disentanglement module extracts and decouples the emotional EEG features to form domain features and class features, and further calculates the dual prototype representation. The Domain-pprototype captures the individual variations across subjects, while the class-prototype captures the cross-individual commonality of emotion categories. In addition, the pairwise learning strategy effectively reduces the noise effect caused by wrong labels. The PL-DCP framework conducts a systematic experimental evaluation on the published datasets SEED, SEED-IV and SEED-V, and the accuracy are 82.88\%, 65.15\% and 61.29\%, respectively. The results show that compared with other State-of-the-Art(SOTA) Methods, the PL-DCP model still achieves slightly better performance than the deep transfer learning method that requires both source and target data, although the target domain is completely unseen during the training. This work provides an effective and robust potential solution for emotion recognition. The source code is available at https://github.com/WuCB-BCI/PL_DCP.