Deep learning methods - usually consisting of a class of deep neural networks (DNNs) trained by a stochastic gradient descent (SGD) optimization method - are nowadays omnipresent in data-driven learning problems as well as in scientific computing tasks such as optimal control (OC) and partial differential equation (PDE) problems. In practically relevant learning tasks, often not the plain-vanilla standard SGD optimization method is employed to train the considered class of DNNs but instead more sophisticated adaptive and accelerated variants of the standard SGD method such as the popular Adam optimizer are used. Inspired by the classical Polyak-Ruppert averaging approach, in this work we apply averaged variants of the Adam optimizer to train DNNs to approximately solve exemplary scientific computing problems in the form of PDEs and OC problems. We test the averaged variants of Adam in a series of learning problems including physics-informed neural network (PINN), deep backward stochastic differential equation (deep BSDE), and deep Kolmogorov approximations for PDEs (such as heat, Black-Scholes, Burgers, and Allen-Cahn PDEs), including DNN approximations for OC problems, and including DNN approximations for image classification problems (ResNet for CIFAR-10). In each of the numerical examples the employed averaged variants of Adam outperform the standard Adam and the standard SGD optimizers, particularly, in the situation of the scientific machine learning problems. The Python source codes for the numerical experiments associated to this work can be found on GitHub at https://github.com/deeplearningmethods/averaged-adam.