Time series driven by unobserved latent states frequently exhibit abrupt jump discontinuities whose timing and magnitude cannot be predicted from observed history alone. Classical jump-diffusion models offer a principled mathematical framework but assume rigid parametric forms, while recent neural jump models operate on fully observed trajectories without inferring the hidden states that govern the dynamics. We propose \textit{Deep ZakaiJ}, a latent-state model for partially observed jump-diffusion systems that embeds the Zakai nonlinear filtering equation into a neural encoder--decoder architecture. The encoder recursively updates a belief over the latent state via Strang splitting into three interpretable substeps: prior propagation, diffusion innovation, and jump innovation, yielding a differentiable, first-order-accurate approximation of the exact filtering evolution. The decoder is a structured jump-diffusion model explicitly conditioned on the filtered belief, preserving the separation between continuous dynamics and discontinuous shocks. On synthetic, financial, and oceanographic datasets, \textit{Deep ZakaiJ} improves distributional forecasts while remaining competitive in point accuracy, achieving calibrated predictive intervals and recovering interpretable latent structure in synthetic and qualitative case studies.