Symbolic Regression (SR) plays a central role in scientific knowledge discovery by distilling mathematical equations from observational data. Most existing SR methods function within a bi-level optimization framework: an outer loop that searches for the discrete equation structure, and an inner loop that optimizes the continuous parameters of that structure. Crucially, parameter-fitting quality directly determines a structure's score and thus the outer-loop search. However, nonlinear operators make the inner loop highly non-convex, and budget-driven reliance on fast local solvers (e.g., BFGS) often yields poor local minima and underestimated scores for correct structures. This ``Good Structure, Bad Score'' phenomenon becomes a key bottleneck, degrading efficiency and misguiding the search away from the true equation. To resolve this, we propose SAGE-Fit (Structure-Aware and Semantics-Guided Evaluator for Symbolic Regression), an SR-native fitting framework that exploits the dual native priors of symbolic expressions. By capitalizing on the structural and semantic priors unique to SR, we design tailored modules for each property, thereby effectively mitigating this optimization bottleneck. Extensive experiments demonstrate that our approach, as a plug-and-play module, significantly enhances evaluation fidelity and universally improves the performance of various SR systems.