This study compares the performance of state-of-the-art neural networks including variants of the YOLOv11 and RT-DETR models for detecting marsh deer in UAV imagery, in scenarios where specimens occupy a very small portion of the image and are occluded by vegetation. We extend previous analysis adding precise segmentation masks for our datasets enabling a fine-grained training of a YOLO model with a segmentation head included. Experimental results show the effectiveness of incorporating the segmentation head achieving superior detection performance. This work contributes valuable insights for improving UAV-based wildlife monitoring and conservation strategies through scalable and accurate AI-driven detection systems.