Sparse point clouds are a common input modality for 3D surface reconstruction, including in safety-critical settings such as surgical navigation and autonomous perception. Recent point-cloud-conditioned 3D diffusion transformers achieve state-of-the-art results in this regime by leveraging learned priors. We show that these models can fail catastrophically under realistic input variation, and present a mechanistic case study of why. We identify a failure mode we call Meltdown: tiny on-surface perturbations to a sparse input point cloud can fracture the reconstructed output into hundreds of disconnected pieces. Adversarial search recovers Meltdown in 89.9-100% of shapes across the two open-weight state-of-the-art architectures we study (WaLa, Make-a-Shape) on real-world datasets (GSO, SimJEB) and under both DDPM and DDIM sampling. We trace Meltdown along the forward pass: it is governed by how uniformly the points are distributed on the surface, faithfully transduced through the point-cloud encoder, and committed by a single early-denoising cross-attention write in the diffusion backbone. Diffusion-trajectory ensembles exhibit symmetry-breaking near this commit step, consistent with a bifurcation of the reverse process. Through a suite of matched-magnitude controls, we show that the variable on which the model commits is directional, concentrated in a low-rank subspace of the write's perturbation drift. Motivated by this finding, we introduce PowerRemap, a test-time control that reshapes the singular spectrum of the localized write to suppress this drift, with rescue rates of 98.3% on WaLa and 84.6% on Make-a-Shape. Together, these results link a circuit-level cross-attention mechanism to a trajectory-level account of the failure, demonstrating how mechanistic analysis can explain and guide behavior in conditional diffusion transformers.