The Drosophila mushroom body (MB) is known to be involved in olfactory learning and memory; the synaptic plasticity of the Kenyon cell (KC) to mushroom body output neuron (MBON) synapses plays a key role in the learning process. Previous research has focused on projection neuron (PN) to Kenyon cell (KC) connectivity within the MB; we examine how perturbations to the mushroom body circuit structure and changes in connectivity, specifically within the KC to mushroom body output neuron (MBON) neural circuit, affect the MBONs' ability to distinguish between odor classes. We constructed a neural network that incorporates the connectivity between PNs, KCs, and MBONs. To train our model, we generated ten artificial input classes, which represent the projection neuron activity in response to different odors. We collected data on the number of KC-to-MBON connections, MBON error rates, and KC-to-MBON synaptic weights, among other metrics. We observed that MBONs with very few presynaptic KCs consistently performed worse than others in the odor classification task. The developmental types of KCs also played a significant role in each MBON's output. We performed random and targeted KC ablation and observed that ablating developmentally mature KCs had a greater negative impact on MBONs' learning capacity than ablating immature KCs. Random and targeted pruning of KC-MBON synaptic connections yielded results largely consistent with the ablation experiments. To further explore the various types of KCs, we also performed rewiring experiments in the PN to KC circuit. Our study furthers our understanding of olfactory neuroplasticity and provides important clues to understanding learning and memory in general. Understanding how the olfactory circuits process and learn can also have potential applications in artificial intelligence and treatments for neurodegenerative diseases.