Large language models (LLMs) increasingly assist software engineering tasks that require reasoning over long code contexts, yet their robustness under varying input conditions remains unclear. We conduct a systematic study of long-context code question answering using controlled ablations that test sensitivity to answer format, distractors, and context scale. Extending LongCodeBench Python dataset with new COBOL and Java question-answer sets, we evaluate state-of-the-art models under three settings: (i) shuffled multiple-choice options, (ii) open-ended questions and (iii) needle-in-a-haystack contexts containing relevant and adversarially irrelevant information. Results show substantial performance drops in both shuffled multiple-choice options and open-ended questions, and brittle behavior in the presence of irrelevant cues. Our findings highlight limitations of current long-context evaluations and provide a broader benchmark for assessing code reasoning in both legacy and modern systems.