Neural IR has advanced through two distinct paths: entity-oriented approaches leveraging knowledge graphs and multi-vector models capturing fine-grained semantics. We introduce QDER, a neural re-ranking model that unifies these approaches by integrating knowledge graph semantics into a multi-vector model. QDER's key innovation lies in its modeling of query-document relationships: rather than computing similarity scores on aggregated embeddings, we maintain individual token and entity representations throughout the ranking process, performing aggregation only at the final scoring stage - an approach we call "late aggregation." We first transform these fine-grained representations through learned attention patterns, then apply carefully chosen mathematical operations for precise matches. Experiments across five standard benchmarks show that QDER achieves significant performance gains, with improvements of 36% in nDCG@20 over the strongest baseline on TREC Robust 2004 and similar improvements on other datasets. QDER particularly excels on difficult queries, achieving an nDCG@20 of 0.70 where traditional approaches fail completely (nDCG@20 = 0.0), setting a foundation for future work in entity-aware retrieval.