The organization of latent knowledge within large-scale models poses unique challenges when addressing overlapping representations and optimizing contextual accuracy. Conceptual redundancies embedded across layers often result in inefficiencies that affect both computational demands and task-specific outcomes. A framework was proposed to restructure these redundancies through advanced clustering techniques and dynamic thresholding, ensuring that critical semantic relationships are preserved while removing unnecessary overlaps. Evaluations revealed improved memory efficiency and faster inference times, alongside better alignment in latent knowledge clusters that enhanced interpretability. Improvements in error rates and adversarial robustness suggest that restructuring redundancies has broader implications for increasing model reliability across diverse applications. Comparative analyses highlighted reductions in resource consumption and notable gains in performance, particularly in translation and summarization tasks. Energy metrics demonstrated significant savings during training phases, further validating the practicality of the approach for real-world deployments. Representational fidelity was also enhanced, with latent space evaluations indicating better cluster alignment and higher semantic consistency. The methodology bridges a key gap in model optimization through directly addressing redundancies at the structural level. Its application opens avenues for scalable, efficient, and contextually aware systems that can adapt to complex, domain-specific tasks without compromising on performance.